Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R

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CRC Press, 8 avr. 2009 - 368 pages
Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic
 

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Table des matières

Chapter 1 Introduction
1
Chapter 2 Sequences
21
Chapter 3 Simple Pattern Matching in Sequences
43
Chapter 4 General Pattern Matching in Sequences
53
Chapter 5 Trees
115
Chapter 6 Simple Pattern Matching in Trees
137
Chapter 7 General Pattern Matching in Trees
155
Chapter 8 Graphs
181
Chapter 9 Simple Pattern Matching in Graphs
211
Chapter 10 General Pattern Matching in Graphs
247
Appendix A Elements of Perl
275
Appendix B Elements of R
305
References
339
Index
351
Back Cover
353
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À propos de l'auteur (2009)

Gabriel Valiente is Associate Professor in the Department of Software at the Technical University of Catalonia. His research interests include computational biology, bioinformatics, exact and approximate matching in graphs and patterns, and graph transformation.

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